NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PicViral_1005752

Scaffold PicViral_1005752


Overview

Basic Information
Taxon OID3300003690 Open in IMG/M
Scaffold IDPicViral_1005752 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5643
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)53.0Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018619Metagenome234Y
F047907Metagenome149Y
F065679Metagenome127Y
F083250Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
PicViral_100575213F065679AGGAGMLKETDGEMRRLGAYHTGIETKVGGVRMPVWKHEAAAAVFAKQGLTFSEGVERLIDTQLIRDR*
PicViral_100575216F047907GGAGGMTVVQCPVPGTYLVRNETEPIPFGQTESSFSVVVHHYERFGWVCERCGYSVRSTRSDCKHIEAAKASRS*
PicViral_10057522F018619GGAMVTSAILNAQIKANEDVLSTHAHNDDPGNGSATLSGVSLSGLDVLVLAAPGGSPSTAGQLRRVGNNLEYYGAALVGLYADAAAATASLRTLGTGSTQAAAGNHTH*
PicViral_10057523F083250AGGAGGMAWTAPRNWSDISNDIVTAAMLNVDVRDNLNVLSTHTHTGSAGQGGASMSGLTLTALVNLTFNDTGAPNAAGEL*
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