NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold PicViral_1006694

Scaffold PicViral_1006694


Overview

Basic Information
Taxon OID3300003690 Open in IMG/M
Scaffold IDPicViral_1006694 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4382
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)53.0Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003161Metagenome504N
F003481Metagenome484Y
F009425Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
PicViral_100669410F003161N/AVIRAEPLALSGTPVLAYWVQGRTNGWQTLSDIGSMTTIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLDGNCTDSTVGSATVSTIDMGGALYRTATIPFSIQIYEEVTITP
PicViral_10066943F009425GAGGMDRGLLIHFKMNRPRDHWREVSCKQIGCVNYANGWKTILPVGDIANIEMIRRSGLGFREEREDGLVTFTFTPGQECFTGQGGGHRVALERDPIMTQDARILEPLNFMDNYNDHMYRRSVNNG*
PicViral_10066948F003481AGGAMTPADDPIQEELRLAREELARLKATEVQMTSGDIVRLVIAAPVVFVWLFLGSRIIISATTSQAVLEHIEPLLLALSILTIPVTAILSSLFKVDGNGK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.