NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PicViral_1006750

Scaffold PicViral_1006750


Overview

Basic Information
Taxon OID3300003690 Open in IMG/M
Scaffold IDPicViral_1006750 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3072
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)53.0Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000423Metagenome / Metatranscriptome1156Y
F007035Metagenome359Y
F012781Metagenome277Y
F081433Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
PicViral_10067501F007035AGGMDKYYILENCHGSFYTEAIANDEFSSLQAAEKKLQALEELKPKGKFFIVTRVQA*
PicViral_10067505F012781AGGAGMFGKNKNAMLTTTLIVKVRKYKDEQPYFSLYSPPSMADENKANEVVIKLNDLEQYNVQEIKEGWQTQYYTLPMTL*
PicViral_10067506F000423N/AMSLNKAIFYIKYYAKKHDCIIERKATLDENCFEGHHKKFGYPYKKYIDVWATEEINNGQPQYRTASKKWEINDTQTL*
PicViral_10067507F081433GGAMIPKHFKKLPHYLQPRIISAVAFIHTASPNINLAQERIAKVAKALSEKELRYVMSLLVLDKLLDMVQDSDEFKNFMPSTGTMH*
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