Scaffold PicViral_1007147

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold PicViral_1007147

Scaffold PicViral_1007147

Overview

Basic Information
Taxon OID	3300003690 Open in IMG/M
Scaffold ID	PicViral_1007147 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3440
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location Name	Mid-Cayman Rise, Caribbean Sea
Coordinates	Lat. (^o)	53.0	Long. (^o)		Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039340	Metagenome	164	Y
F054352	Metagenome	140	Y
F105887	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10071472	F054352	AGGAG	MKTSTQLLLEAKRHKDIRDVMLDSLEQFRATRTMVQDCCDDLGVSWGTFYKWAKDMNIEVGDYHFAAARR*
PicViral_10071473	F039340	GGAGG	MFRPGYHFDNHKLLVDQLHLIMDEAAVEYDTDEDVVDDFTQYVKDWASRRSEARLDKAEGI*
PicViral_10071478	F105887	AGGAGG	MIKLTNIEGISRLSGTDEQGNAWIQFEADYFAEQTDGECHICGEPLAAGWVRLDGGDEVCSDHVQFI*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.