Basic Information | |
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Taxon OID | 3300003698 Open in IMG/M |
Scaffold ID | Ga0003068J53076_1040305 Open in IMG/M |
Source Dataset Name | Groundwater microbial communities from S. Glens Falls, New York, USA - water-only treatment rep 2 (Metagenome Metatranscriptome, Counting Only) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 858 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | S. Glens Falls, New York, USA | |||||||
Coordinates | Lat. (o) | 43.099444 | Long. (o) | -73.604444 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F028190 | Metagenome / Metatranscriptome | 192 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0003068J53076_10403051 | F028190 | N/A | MTVKKFDGTTDIVFDALSPSAGDNVPAVWRQDTGNAAGLPVGLRSMVRMTTKDNGPKTARQVKLTFDFPYAVQDSTTTLYSAKDRVHGEVMFTVPVAIPATWINEAIAQAFNLIDHALIHSSAQAGYAPT* |
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