Scaffold Ga0003070J53073_1021393

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0003070J53073_1021393

Scaffold Ga0003070J53073_1021393

Overview

Basic Information
Taxon OID	3300003699 Open in IMG/M
Scaffold ID	Ga0003070J53073_1021393 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from S. Glens Falls, New York, USA - Field experiment aqueous naphthalene treatment rep 1 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2155
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location Name	S. Glens Falls, New York, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-73.604444	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028190	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0003070J53073_10213933	F028190	N/A	MANMTVKKFDGTTDIVFDALSPSAGDNVPAVWRQDTGNAAGLPVGLRSMVRMTTKDNGPKTARQVKLTFDFPYAVQDSTTTLYSAKDRVHGEVMFTVPVAIPATWINEAIAQAFNLIDHALIHSSAQAGYAPT*

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