NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0008094_102714

Scaffold Ga0008094_102714


Overview

Basic Information
Taxon OID3300003705 Open in IMG/M
Scaffold IDGa0008094_102714 Open in IMG/M
Source Dataset NameTropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A10 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)990
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil → Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales

Source Dataset Sampling Location
Location NameAmazon Forest, Brazil
CoordinatesLat. (o)-10.0Long. (o)-62.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039955Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0008094_1027141F039955AGGAGGMGFFAALDSWLESLGRKTEDDSGFIQVIQYGSTKSYTFRRDVVRGNFLLPEIPDQGILIAVLRATQQFYLPDLSDEDFDNLHQMLILIDDVILGGLKDPSNWVLPRGFSDIPFVKSRLDKNYPIEQILEYMLAATRLYVWLYQHESETVSELIPHLLELEESFESLRTRNGVVDSSQGSALKY*
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