NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0049094_10030749

Scaffold Ga0049094_10030749


Overview

Basic Information
Taxon OID3300003772 Open in IMG/M
Scaffold IDGa0049094_10030749 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus exumae BAHAMAS.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1994
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000424Metagenome1155Y

Sequences

Protein IDFamilyRBSSequence
Ga0049094_100307491F000424N/AVTSLAGEIYLLRWKARDQVEVYDVITYSLQRCLTVPNLHVLADMTSCEHCRCVYIGDGGGKCVHRLDVQGAFTRWTVNDKPFGLSVNTSHNVIVTCYEVRKVKEFSSRGALLRQIILPDDVINPAHTLQTRSGQFIVCHGDVDDPVHRVCMMSADGRHIVHSHGGQRGSDTGQYDVPAHLAVDDNEFVFVVDINNRRVTLLSPTLEYVRQVVSRDQLKGVPRRLYLHEQQRLLYVADNEWKDGKWTAGRVVVFSV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.