NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007811_1000066

Scaffold Ga0007811_1000066


Overview

Basic Information
Taxon OID3300003787 Open in IMG/M
Scaffold IDGa0007811_1000066 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15017
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (65.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046749Metagenome150N
F050811Metagenome144N
F063289Metagenome129Y
F082065Metagenome / Metatranscriptome113Y
F098538Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0007811_100006630F063289N/AMRVAMELKRDGWVYDMTGLSVTECQDRANWCREAFGPMFDDITWAGKWYGAQLPFQTGGVNVNRQFVFMFRDEKLYTIYRMMWPE*
Ga0007811_100006631F050811GGAMMPLHANLLLDHEYTIVEINDRTLVHDWLVESFGNPGTRWFYNGNKIYFRDERDWMWFELRT*
Ga0007811_100006632F046749GGAGMQDSNQHFYNQMEMHVRDSNRTLRRLRRPPLPQINAWDVTMSDDVLYQQVYAEEVPCVEIFMPKDRLETIINYIKYAEDEIDKHDTDKKLIARYEHDRVVRLNNPAVEKAYQHYCTLLELCRT*
Ga0007811_10000665F098538GGAGMSDQLQQVAQSGDQWAAERANYAIQVHGAVGAGQLSASEAKEILQDMINTQQLQEQANADHVKAALFFGIMELISLYG*
Ga0007811_10000666F082065AGGAMKRLLLIAVLTLSGCSTLSDLKDQIPSFWDGNQSVVVTDMQQIARHIDCTGDVKPQLHDLFMKVEWYDLYANTKGTKDMAKLDVVMLNTIKEFQDRVAQGPVSPLYCDMKKKVLIQQADIIATTVQGRF*
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