NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007811_1000817

Scaffold Ga0007811_1000817


Overview

Basic Information
Taxon OID3300003787 Open in IMG/M
Scaffold IDGa0007811_1000817 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4707
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010516Metagenome302Y
F060487Metagenome132N
F070722Metagenome122N
F071820Metagenome121N
F086514Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0007811_10008171F086514AGGMMINPLNAIYTQSGIPNSILQQESIDEPYLTARLRDMDIREYLKEMGRKGGKARAAKLTPEEKTRIALQGVFMKQ
Ga0007811_10008173F071820N/AMSQQRSKATSWASLLQHEIKATEKKPVGKGWKTAKELQREFKVGERKLYEILAKLSREKRIERFSGFIINDSGQKATRAWYRVKRSA*
Ga0007811_10008174F060487N/AMMKNKTPKSRIKELEAQVKHLQMIVASRELDVEILEEQINTMEHNKFVNRVKRFFLRDTTL*
Ga0007811_10008177F070722N/AMNDDLLKQALAQIGRKGGLSTSDKKRASSRLNAAKATEARLKRQKPVKGHRIAPNEHIMD
Ga0007811_10008178F010516N/AMSQNPYAVWVPSDTGRYLITFATLDEAYLFIIKFGGGLEVVPNTYENF*
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