Basic Information | |
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Taxon OID | 3300003787 Open in IMG/M |
Scaffold ID | Ga0007811_1004275 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1671 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008554 | Metagenome | 331 | Y |
F046749 | Metagenome | 150 | N |
F050811 | Metagenome | 144 | N |
F063289 | Metagenome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0007811_10042752 | F008554 | N/A | MTLEDEIADKMAEQMSREVDREILWGMLQGMGWTRVMLPRLIDNHHAIDITCWLEENCRHAVEREGRDFLFEDLKDANWFKLRWGTE* |
Ga0007811_10042755 | F046749 | GGAG | MNDHNQQFYNQMEMQVRPSNRPLRRLKQQPLPQVNAWDVTMSDELLYQQAYAEEVPCVEILMPKDRLETIINYIKYAEDEIDKHTTDKKLIARYERDRVVRLNNPAVEKAYQHYCTLLELCRT* |
Ga0007811_10042756 | F050811 | GGA | MMPLHNNLLLDHEYHVVEVNDRTLIHNWLVETFGRPGQRWFCNGNKIYFRDEKDWMWFELRT* |
Ga0007811_10042757 | F063289 | GAG | MMAVTQERFEMQTAQQLKQEGWIHDITDLSVTECQDRANWCREAFGSMFDDITWTGKWYGAQLPFQTGSIVPNRQFVFMFRDDKLYTMYKLM |
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