Basic Information | |
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Taxon OID | 3300003787 Open in IMG/M |
Scaffold ID | Ga0007811_1005362 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1414 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008554 | Metagenome | 331 | Y |
F050811 | Metagenome | 144 | N |
F063289 | Metagenome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0007811_10053621 | F008554 | N/A | DLAREVDREILWGMLQGLGWTRVMIPKFIDNHHAIDITYWLEENCKKAYERSGRDFLFEDTKDANWFKLRWGTE* |
Ga0007811_10053624 | F050811 | GGAG | MIPLHNDLVLNHEYHVVEVNDRTLIHNWLVETFGRPGQRWFCNGNKIYFRDEQDWMWFELRT* |
Ga0007811_10053625 | F063289 | GAG | MAVTERQEMRTAQMLKRDGWVHDMYDLSVKECQERANWCRETFGGMYNDLTMSGKWYGAELPFQAGGVTPKRQFVFMFRDDKLYTMYRMMFPE* |
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