NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007817_1001955

Scaffold Ga0007817_1001955


Overview

Basic Information
Taxon OID3300003804 Open in IMG/M
Scaffold IDGa0007817_1001955 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29May09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1684
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008745Metagenome / Metatranscriptome328N
F040465Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0007817_10019552F008745GGAMSNGYQITEEERDTLXCPRLECMGAQELLDVWLLPLVLEVGGILEEAYRTSHQLFERGQGEERLLGHLQHKLMTAIDELEVVQGWIASSCNMSSDKECRVLDGEEDKSEGKVLKEGSEANQSADQQADCGKQKSTSYYQWKLRHE*
Ga0007817_10019553F040465N/AMSDKEVDECAQWPEITEEELSFAENLWNRDSSPDEQRLDDWLRVMEEIVATIGYTYHSSFQLLKSNNLKNESLLEALRGMYIFAMAEVNVAKRKTTSS*
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