NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007879_1013657

Scaffold Ga0007879_1013657


Overview

Basic Information
Taxon OID3300003813 Open in IMG/M
Scaffold IDGa0007879_1013657 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jun09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)887
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030662Metagenome184Y
F061530Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0007879_10136571F030662GAGMRLKDKNGPIPSGLWYEYSDDKGTKYRVNGMEMTYGRQFSNKVASDMKNNNVEVPDNLDYLIEQQICGRIPGQYCWQEAGDKVANVIHTFASLGDRVAATLGVQTNLE
Ga0007879_10136572F061530N/AMEYNGLVLDAPKDTTYGIPYLETVPQFVRELSCYALTRGEFGRIQRIKRGIRIEDTDLKNPAQHMVNCFNLIYGNDVLLHSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVMDWISAPTVTSTYVASTSLDASEDRLWGKVCTLYRVAMRNIQAQYKTAT
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