NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0031658_1003645

Scaffold Ga0031658_1003645


Overview

Basic Information
Taxon OID3300003860 Open in IMG/M
Scaffold IDGa0031658_1003645 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2733
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003687Metagenome / Metatranscriptome473Y
F021097Metagenome220Y
F059883Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0031658_10036453F059883N/AMTEDNKRYHLIITVDEKYAIVNALAFYHAHHIQGALMDEDEREQYMLAFQEDGPTFVDQLATKIANTF*
Ga0031658_10036458F003687N/AMNYQAVEQLLTQDARLLARRDAPVIDQELEEQRQAALEIFFQWQDGMREYQDLMPFCVVLQRKVDLNRDLLRWERRHED*
Ga0031658_10036459F021097AGGMQRNYQRNYFSDACVAILCGTGLGLLLSVGAQKVLNRHYKATCHNQPGHNLIYTKSFLGDTYYCINSKYMN*
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