Scaffold Ga0063294_10151597

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063294_10151597

Scaffold Ga0063294_10151597

Overview

Basic Information
Taxon OID	3300003885 Open in IMG/M
Scaffold ID	Ga0063294_10151597 Open in IMG/M
Source Dataset Name	Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean - Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1491
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vents → Black Smoker Hydrothermal Vent Sediment Microbial Communities From The Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean

Source Dataset Sampling Location
Location Name	Mid-Atlantic Ridge, South Atlantic Ocean
Coordinates	Lat. (^o)	-15.160005	Long. (^o)	-13.350021	Alt. (m)		Depth (m)	2770
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F093890	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063294_101515972	F093890	GGAGG	VRSRLRVFLFVLSCMLFVSLCSTDLLASPTFLNRQAYPLPLGLTEIGQFHNNDLKTFEVWTQWNNASNEKLVVKITFTFFDKDSDDSQLGEDGKDDSLMAVTETVTIPEQVSNWGKYFQLTVIGQKLNLGFDHPAEGAGLELYLDAQVISVKHLPPE*

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