Scaffold Ga0063241_1010219

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063241_1010219

Scaffold Ga0063241_1010219

Overview

Basic Information
Taxon OID	3300003894 Open in IMG/M
Scaffold ID	Ga0063241_1010219 Open in IMG/M
Source Dataset Name	Marine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessment
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Argonne National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13352
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities From The Northern Gulf Of Mexico Hypoxic Zone

Source Dataset Sampling Location
Location Name	northern Gulf of Mexico, LA
Coordinates	Lat. (^o)	28.7167	Long. (^o)	-90.8333	Alt. (m)		Depth (m)	16
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028657	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063241_101021912	F028657	N/A	MEDRESTSKSADAAAQRVGSDPFAKMTRRIFVLSMVAMGAWAMIAGLTGLDIVVPVTQEVGGSYLFGIIDTTKTVTEYLRFENAVVEFEWLKISLLAAGSFYLGKS*

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