NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063241_1020230

Scaffold Ga0063241_1020230


Overview

Basic Information
Taxon OID3300003894 Open in IMG/M
Scaffold IDGa0063241_1020230 Open in IMG/M
Source Dataset NameMarine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterArgonne National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3570
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities From The Northern Gulf Of Mexico Hypoxic Zone

Source Dataset Sampling Location
Location Namenorthern Gulf of Mexico, LA
CoordinatesLat. (o)28.7167Long. (o)-90.8333Alt. (m)Depth (m)16
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042576Metagenome158N
F077237Metagenome117N
F105890Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0063241_102023010F105890GGAGGMTILVHKTESSRLAHEVSKLNVQEIHEFVDILKKLEDITNVSGEGNFNFSAVKQRIAFNEYTEEM*
Ga0063241_10202305F042576GGAGMAKTATTKKSMLSSAKTQTKTAKTTPKIRFGGYSPEAILEPTGKTVTAATNNERVIAVKGKTVSEALTSGLYTLSALRYDIERVKTLKIA*
Ga0063241_10202306F077237AGGAGGMKEEANGLRVITIDPFKEKIRTAYPLRKSYMEEIKEWMGVAMIDIVTLDDNNMLIVDDNGLLHTHNRYFKWLPTDYDYAGKAVIVGYDNDGATTDASYHPRRVEDELLKFMPDGHKVEPFMEFVSF*
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