NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI26437J51864_10002779

Scaffold JGI26437J51864_10002779


Overview

Basic Information
Taxon OID3300003910 Open in IMG/M
Scaffold IDJGI26437J51864_10002779 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3957
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082162Metagenome113N
F096672Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
JGI26437J51864_100027792F082162GAGLEIRPVMLPFFTSFEVNKDKRTLKPYMAPVNHNIIDETTWLKIVHTLMGNFCQDDDDVKGMVAMEDMGNDACVLVGYHQNVRNRLKGETCLNVV*
JGI26437J51864_100027793F096672GGAMWSNFLLQYRENSRVNQADENLISMVRLNPVTAGDESIPIKRGLFSVMKKIDEILTSVELKNFLLTDATTEEGEQDVLTYFQVDDGHWQELLKEWQEKHKTPLTGYQRYYELLYHVKSRSRRDHIWFSFFEGMHRHAAVVVGLVCSKFNHSTNELKPGSLTLDDFRNEGVLKSFKDPGITVAAHLDMIMTKQIDTPMFQNGFHLTAYIPKFQGKTLDEINKDDAGKLIDAARMHSEWISEFKLASATKTLSKNIAIWLETTLHHSTRDTRNNRNYRPKVDAEGASVILPQIDTKQKAVQKXMDKMKQADDAVFYGCPSCITSGVWDAYXKNPFDMVARKAWVKSIALPCTDANKVTEMTPPYRITYESVTTDVGLLESRNGPRKVDARMYNGYLIIPGLVYHLLSKMXNVRVNTLLGNDXAVKVINFIARYGNYTRKSPYVTVHGAYSRYIEMTDPNWVNACTGXNQVIPVTLFLVVLYNACFMFQDANDTNLLIMALDTFDLGANVGQEXFITTFSESXFPNXSIQENFAXQXLLNNHXFCLFHP*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.