Scaffold JGI26437J51864_10005247

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26437J51864_10005247

Scaffold JGI26437J51864_10005247

Overview

Basic Information
Taxon OID	3300003910 Open in IMG/M
Scaffold ID	JGI26437J51864_10005247 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2890
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050934	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26437J51864_100052473	F050934	N/A	LQGDACYACPTNKERNAIQAAIFQKHIEATHPNVTSDELPPEHTLIIEANISSSVSNTTQQRIDRHLRHRIITSCGDANVMMGTKHIDPALCLYTGAYLICIDNKHLTDKVPRGNGTLCRVLGVKLKDDAQSYKYKNYYGKKVWTVNAADVEWVECEHVYKSSFITQLESQIKELKCDLDLQRNDNKSDNNTMKSKLDELKKKLAKEMNDRRFKLEPEQFLPEVTVKHYYVSSKKFRCKMMQIPANSNDATTGHKLQGMSKDAIIVSSWPTGNLAAMFKNWEYVXLSRVRTLSGLYLVKPIDMDKSFQPSPQLASYMDKIRKFEKNMLEKRQLEISKTFSDIIRL*

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