NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25405J52794_10004715

Scaffold JGI25405J52794_10004715


Overview

Basic Information
Taxon OID3300003911 Open in IMG/M
Scaffold IDJGI25405J52794_10004715 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2441
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045430Metagenome153N

Sequences

Protein IDFamilyRBSSequence
JGI25405J52794_100047153F045430N/AMMSNQSMKPTAPLRSKILRKASITLIIIGCWSFNAYADDTMQHAAKEFASAVQNPKKLQDLIGDDGLIVIRNFVTGGWGTRGNDIRYSLQKRDVPLDGSFPVKGESPVRLSFLFPESAKKGLGAEFLTVQAKSNLCFFSKRSKNCSQFPTTNDAIDIIAEAIDDIKLGTVSIVKLSSDEFLYTEAETIGGWPLGGSAVFSIRQGRYRLVALLDLR*
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