Basic Information | |
---|---|
Taxon OID | 3300003937 Open in IMG/M |
Scaffold ID | Ga0063391_1002772 Open in IMG/M |
Source Dataset Name | SPOT_150m_metagenome_year |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of California, Davis |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 29282 |
Total Scaffold Genes | 52 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (67.31%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | San Pedro Channel, Pacific | |||||||
Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.42 | Alt. (m) | Depth (m) | 890 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007774 | Metagenome / Metatranscriptome | 345 | Y |
F033843 | Metagenome / Metatranscriptome | 176 | Y |
F057690 | Metagenome | 136 | Y |
F080155 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0063391_100277219 | F007774 | GAG | MSKKDKLTPEQEKELIKLSAEIEAEAIAMKVDYDKNPSHESGSVVYVNELSSLLEDEDERLGDKALISSSQILAKELKKQKKKGEK* |
Ga0063391_100277239 | F057690 | N/A | MKEWYHIKATHPTIGVVKFWLHQKNENDVRKLVTKKGYTDIEWIRQETPPFI* |
Ga0063391_100277248 | F080155 | N/A | MINTYLSLEYISIVLFGLIMVLFSIGSAYLNIEKDSKDE* |
Ga0063391_100277250 | F033843 | GAGG | MKIRKTLYYILGFFLFCGWADLVWGQTEKWSDESITLATTLTSLSVLDARQTFHMEEYRMYYDKLEPITYAHEVNPLIGKSPTKDRVVMVKVLSGALMYFGLNKMKEKNRMKALTYLNVFYFIVVLHNASLGLMS* |
⦗Top⦘ |