NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0064031_11234

Scaffold Ga0064031_11234


Overview

Basic Information
Taxon OID3300003948 Open in IMG/M
Scaffold IDGa0064031_11234 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_80_12L9
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)573
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameAnemone diffuse flow vent, Axial seamount
CoordinatesLat. (o)45.933Long. (o)-130.014Alt. (m)Depth (m)1542
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042865Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0064031_112341F042865AGGCGGMALRVPDYETFLAADDFNKRIWWSFMQSVVNDLPLNGNVAPENIVRANKSCLYVESTGGTAVLWFNPNGNGSATGWIVK*

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