NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0064030_12093

Scaffold Ga0064030_12093


Overview

Basic Information
Taxon OID3300003951 Open in IMG/M
Scaffold IDGa0064030_12093 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_80_12L10
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1112
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameAnemone diffuse flow vent, Axial seamount
CoordinatesLat. (o)45.933Long. (o)-130.014Alt. (m)Depth (m)1542
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082613Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0064030_120931F082613N/ATNSISLSQAVVGVAALTQTGTYGVNGFPSELAWNITITSSANISAVNLTIVYLDAQLTQQSIVVAGPNATTKDAGIYATKIISVTTSASASNILIGHTNVGFAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLAALTASAFDTVDTREIGVRLKFNSWSSGNVRLDLSVSAKG*
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