NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063037_108474

Scaffold Ga0063037_108474


Overview

Basic Information
Taxon OID3300003979 Open in IMG/M
Scaffold IDGa0063037_108474 Open in IMG/M
Source Dataset NameDiffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2355
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent → Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Source Dataset Sampling Location
Location NameMid-Atlantic Ridge
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024128Metagenome207Y
F062152Metagenome / Metatranscriptome131Y
F076483Metagenome118Y
F084713Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0063037_1084742F024128N/AMITKKDTKEYLEKTKRILDRGNASLSDNLKYINDTVSHLEINRFQGVGDIMYQVVAKALTINVVTGKKAFVVWAVQEENDMETAVQKAKDELRNRIVMGMPVLQFAGPEQDVRNLTEY*
Ga0063037_1084745F076483GGAGMQMISSNKLGQIFRTATFVDRITKIRTLQTFLNDTTLDIPLMRRKVTELNMRWILRNVKVNNSEHINLNKIIKLIKEII*
Ga0063037_1084746F062152AGGAGMAGAHYTNDLVNHINILNQQTRDRGAVGFLTNDPDHWAEYGVYTIGDFQVYLEREHERNMYKNSLGE*
Ga0063037_1084748F084713GGAGMPKLIIEKIQNKKTYGKDMYKAVKLIDSHRLSLLETRFDEPSMLRYIQSLPNTYNYEIKNKTGV*
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