Scaffold Ga0055451_10107639

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0055451_10107639

Scaffold Ga0055451_10107639

Overview

Basic Information
Taxon OID	3300004004 Open in IMG/M
Scaffold ID	Ga0055451_10107639 Open in IMG/M
Source Dataset Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWB_D2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1110
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location Name	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.015041	Long. (^o)	-122.501831	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F091343	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0055451_101076392	F091343	AGGAG	MQHAALWLIGPDMPGLLKLGAKFVFDRGGNIDKTISDKFGEKAVVFMSLTAKPPDIKRMDQDRALLKNESGCGVVFQPMHQPTVPDGFQEDLHGFDVVTDDSPGLLSELTDLLGSFGLLIVGHTGERRMVPGPRPRYQSGQKFVVMLPHTFDHVGFTRELSALVKKHHGVMVTPLRTVPGLLWWW*

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