NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0055439_10065016

Scaffold Ga0055439_10065016


Overview

Basic Information
Taxon OID3300004019 Open in IMG/M
Scaffold IDGa0055439_10065016 Open in IMG/M
Source Dataset NameWetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1021
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)38.04565Long. (o)-121.866287Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024975Metagenome / Metatranscriptome203N
F096085Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0055439_100650161F096085N/AGLRRRFGMTSALAWNGWYDPRAVLDGSEEIPLLLALGERVERLPTRRRGCLVFDSSRHAAQKAGALDNRYTLGDEDAPSREHLKALGIRRVSAWVWDAPAEDLSAYLDYLRTRMPVRVIDEVSRRG*
Ga0055439_100650162F024975GAGGVAERGGVDKRLALKLAAGILAASALAGCDSRPESAKAPNCAPPATAPGSAGWDDPNGCWEQRPDGRRLYRTGFGGSYYYYSEPPSYSRYSNQGGRWSRAGASGGGYHGAHSAAA*
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