Scaffold Ga0055500_10002885

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0055500_10002885

Scaffold Ga0055500_10002885

Overview

Basic Information
Taxon OID	3300004062 Open in IMG/M
Scaffold ID	Ga0055500_10002885 Open in IMG/M
Source Dataset Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2419
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location Name	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.000637	Long. (^o)	-121.624207	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101973	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0055500_100028852	F101973	N/A	MASLLMAGFSSLLGCENPSSKDVASMIAEPQGEGVTSLLRGIDYKVNGTKIDVGTHRIEVFPYVEQCSDTASEHVCGVRFEVSTEGKGQPALTYGVVGTGKTQDAALKHAVQSWWAEFNVPLIVSLAGKNLDFEQSSIVVYPGAMAIRGVPPGGWLDGSKEMHGRIVPALNPVVRDKPPTKVISLLLVIRPEGVKDLGSRIDGTPSRELVAAVSSLPWPKSDKEYVFYQTYFFRHKDESSISGG*

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