NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062385_10101955

Scaffold Ga0062385_10101955


Overview

Basic Information
Taxon OID3300004080 Open in IMG/M
Scaffold IDGa0062385_10101955 Open in IMG/M
Source Dataset NameCoassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1391
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000043Metagenome / Metatranscriptome3655Y
F030510Metagenome / Metatranscriptome185Y
F058223Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0062385_101019551F030510GGAVATQDSPDAGSIRNAIRWGLLLAAIATATFRLPRLVNEYRAWREALGLGDPSAAEGWHRVLTVELIGVLVVLAIGVGAFYLLRPKAKAAE*
Ga0062385_101019552F000043N/AMIYQLGWTTLPGLRGLSVSEFRAMPTISPDNTRGVAVEFAGDAERDNFLKQLEEHFGSRRFTNAADAFDSVKALVLDQVDKRKGG*
Ga0062385_101019553F058223GGAGGMSDASEMTVRILRRNTETLLQSKDEEYSYWQSRPPLERLVAMQELSFAFFEERGNEAEIRQQFLRSPVCLPRL*
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