NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063454_100221547

Scaffold Ga0063454_100221547


Overview

Basic Information
Taxon OID3300004081 Open in IMG/M
Scaffold IDGa0063454_100221547 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Hopland, California, USA - 2 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1100
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location NameHopland, California
CoordinatesLat. (o)38.99297339Long. (o)-123.0674491Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013355Metagenome / Metatranscriptome272Y
F051700Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0063454_1002215471F051700AGAAGMVSRKARLSDRQKRGAARIARQKGLVCPDCGSSEPVPKEGGELKDLPDGGLEVPVRCEACEGASEMALVLSPEEAEALGLHSLGGGRQES*
Ga0063454_1002215472F013355AGGAGVRGKYMCLELDETTTDGGVDKVATTTMSKTYFEDLGRIAESNAKSAQESARIATEYWGASREKNNEVAREMSHTLTEGMWRQKGANEELVSRIFEILQERDEAHKRFFSQWAQAFTSVPFEYTRQATREAQKKKSASLK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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