Scaffold Ga0055584_100016777

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0055584_100016777

Scaffold Ga0055584_100016777

Overview

Basic Information
Taxon OID	3300004097 Open in IMG/M
Scaffold ID	Ga0055584_100016777 Open in IMG/M
Source Dataset Name	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7195
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (15.38%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, North Sea, Atlantic Ocean
Coordinates	Lat. (^o)	54.18194	Long. (^o)	7.9	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F100002	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_1000167778	F100002	N/A	MSQIKTIKTVRLMGDEPRSTPNGDLWGFWLEFDDGTKGVANGKSKAPRWAEAGATVEATDSTYKTPKGHTKWKISIPREIPQDSQGYTGHQSSDGTETFYKRPNYSSNGSGGVDKGRDIAIQACVNQACQAAVQDSTFKNNGFDEEKFLYLVDRIARVCLKVGDALREDRELVQEEGAPF

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