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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300004097 Open in IMG/M |
| Scaffold ID | Ga0055584_100018180 Open in IMG/M |
| Source Dataset Name | Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6911 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Helgoland, North Sea, Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 54.18194 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003693 | Metagenome / Metatranscriptome | 473 | Y |
| F012779 | Metagenome / Metatranscriptome | 277 | Y |
| F018479 | Metagenome / Metatranscriptome | 235 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0055584_1000181801 | F018479 | AGGAGG | MSTTIGDLVDRTFREYLEPMDDIVSYTTLSNSDLLDDGVTVGLTDTATEVTFNGDLLSVEEEDALDAGTIIEIGQELMICRDLNPVTNTVTVTRGVRGTTAAEHAQGSLIKISPPFPRKNVFDAVVDQIKNLFPTLFSVETVNVTSGAGYVLLGSYDAPGTNNYLVSVLKAISQYTDFSSGSDQTGVIFQPVSVQMIQLPNPFTYTDDNGTERTITYTTGPNQVNALQFYSIDQGHTCYITFKKKFVEPTAESDTLTTIGLEDEYEPIIMAGVAAHMMSGRDIPAATTDYITDQMAAQAYPVGSSNSIRNSLLQYQQLLITQARKYLRAKYPEAVEINGVNSGVQ* |
| Ga0055584_1000181802 | F003693 | AGG | MIISKQALIDVSEDASNSVGFKLDGMLLCGIQFPATMTGSAVTFDFSLDNTNWADVKETDGTDVSYTISAGDAVRVDPSGWAFASNGYLRITSDGTEAADRSIIVHLRHS* |
| Ga0055584_1000181804 | F012779 | GGA | MTEELNNSDTGEKNWKEMREKLNLYEAKIAEYEGKERHEVFNKAGLDITKGVGKAVEMMYEGDMTVEGIQEYASHEFGVEFGNQDRLQDTVQATEQSQDRLNNIQQNSVVDLYNTDAVSEVRDIEKTGSTRQSIAAKLSVMEEAKKNK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |