NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0055584_100050411

Scaffold Ga0055584_100050411


Overview

Basic Information
Taxon OID3300004097 Open in IMG/M
Scaffold IDGa0055584_100050411 Open in IMG/M
Source Dataset NamePelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4102
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, North Sea, Atlantic Ocean
CoordinatesLat. (o)54.18194Long. (o)7.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022458Metagenome / Metatranscriptome214Y
F030151Metagenome / Metatranscriptome186Y
F068870Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0055584_1000504114F030151AGGMLYFEATNIEELEEEARKRAHEVSVSTTRSIIEALEKGADKVVVGVLKTMDLDLSVEKSGYLDSLETNLVRVEEAEEFELCKESIKWIKKLRE*
Ga0055584_1000504115F022458N/AMIDDWLNQNPDDGFDPNDHGIEMDEIAKLHAMADMKEDQETWAREQANKFYNDFETLDIKESVLAITSLIRTKVLNINQVNNMLDNMIKVFSQDEEYEKCHTVNEIKKGLK*
Ga0055584_1000504118F068870N/AMDQLTSKPSCIEDLKQLVNQLADRDVNIKNHLSCIKEILADKKIKCDTTKIKKIKQILKNG*
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