NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0055584_100190879

Scaffold Ga0055584_100190879


Overview

Basic Information
Taxon OID3300004097 Open in IMG/M
Scaffold IDGa0055584_100190879 Open in IMG/M
Source Dataset NamePelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2078
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, North Sea, Atlantic Ocean
CoordinatesLat. (o)54.18194Long. (o)7.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034541Metagenome / Metatranscriptome174N
F042349Metagenome / Metatranscriptome158N
F057435Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0055584_1001908791F057435AGAAGGMLKQIERKIILFTEATGVAERAEFVHGTLFVKFHNSEDKEWFRISLKNFCKDFINDDTGINGNVVGDEFAYDIVPAKDETTGWNTSQTQESLVDTYINQQEGK*
Ga0055584_1001908793F042349GGAGGMIEFEIGDKVKVVGQSMVGEVIDIDYGENIVTISDLYAETNNSEHQYKADELQFLATDHDEDGDMDSLDEMRDMEMRDNGYKWDDWN*
Ga0055584_1001908794F034541GGAMKTVESMTWDELQSALTEYQVNGNGGGMGVKDIQVKHSIEDEVAWRLEKGYTDLTPREIEIELLEQGKIHQRYL*
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