NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0055584_100240444

Scaffold Ga0055584_100240444


Overview

Basic Information
Taxon OID3300004097 Open in IMG/M
Scaffold IDGa0055584_100240444 Open in IMG/M
Source Dataset NamePelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1846
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, North Sea, Atlantic Ocean
CoordinatesLat. (o)54.18194Long. (o)7.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041743Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0055584_1002404442F041743AGGAGGMSLQTIIDNAQYITVDRRELTGSSMSRSGQYKTADRNVNVYSFTMGMHNGLKYSTNRAVLEDLYSATSTTNEANISLNNNTDMNYLTAYQGDLTSGQQAEISVNGVTGKEIYIDQTGITGDVSGYTHILKKGDFIQPKGNTDTYRYPYQVTSDVAFNIADSNTTVSVHRPVLSQTGVALTSGGVKLGNDVTWRVKITSLPTYSVVPYDRIEFSETFNLIEVIT*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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