NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0055584_100244980

Scaffold Ga0055584_100244980


Overview

Basic Information
Taxon OID3300004097 Open in IMG/M
Scaffold IDGa0055584_100244980 Open in IMG/M
Source Dataset NamePelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1829
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, North Sea, Atlantic Ocean
CoordinatesLat. (o)54.18194Long. (o)7.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006221Metagenome / Metatranscriptome378Y
F031509Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0055584_1002449802F031509AGGAMTDNKINYILKVMWPPHCRNRSREVLENRADIVKEMNGMRNKIENFLKASCSGYYKLSDEYDMQGFNIGLESGPDIYNFILEQATIGYEVDREIGRYNIFSDKFIKHRILYTPKGIVIG*
Ga0055584_1002449803F006221N/AMKKHKYITVLGKNNCKMPLPELRQYGPVISVSNHMHNAGHLDYVWTREEKDLLWFLQQRPAPVNCVTTPDLYKKYVFYDQVHSFPPISPQFNLTLDVNTDDQTLALLTALGLAQQRIMLVGFDISDPRVLKDLRSIIMLHPDIKFYFLCNPPKTKQLDYCSNAECVLFKDIGSLKND*
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