Basic Information | |
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Taxon OID | 3300004097 Open in IMG/M |
Scaffold ID | Ga0055584_100593755 Open in IMG/M |
Source Dataset Name | Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1156 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Helgoland, North Sea, Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 54.18194 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F017488 | Metagenome / Metatranscriptome | 240 | Y |
F052627 | Metagenome / Metatranscriptome | 142 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0055584_1005937551 | F052627 | AGG | MSKRTDLIGEITTNLTAHTTYGVSTELPFDSGGNPLYEKNMNVVYVDEEELLVEQLYRTLDQGEVNQTTTTINAYLSTDAKNQSSDINTVVANLLIARNVVTNVLDKNSDYETEITDDVITYTFEYNFITV* |
Ga0055584_1005937552 | F017488 | AGGAG | MAFITNGAGDVISFAEYTDVVQKDQRLFESNVIKIPEESGFVDVTEFIEDMLERSTQRILLKLKASSWWQGYLAYVGSPVSNLNALPNVNPNLIDPGNANNRRTAFTELCVYHSFSQYILPLIADFGNEESEEVAKIKYYDARFNDLFNELISLADFYDFDDSGTVDTDEKAISYAPTRRTRSRRSIVKVR* |
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