NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065166_10003987

Scaffold Ga0065166_10003987


Overview

Basic Information
Taxon OID3300004112 Open in IMG/M
Scaffold IDGa0065166_10003987 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3539
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001923Metagenome / Metatranscriptome617Y
F024551Metagenome205Y
F042864Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0065166_1000398711F001923N/APPPPIDPESLPKELKDGIVASVLGGLAMTARLLLSTEPVSLGWVVRRVLAAAITAALVGYGIQDHIQSPGLRMAVVGAAGYAAPECLDYLMKYIKARGEKEVAAVVGKPKPHGKGKAVTKRKR*
Ga0065166_100039875F024551N/AMTIIKPDSLPRLWWLFPWSVARQLHKNAVALREMADNQSTTITNQAKILGRYMDENRELKAEVTRLSHSREHWIAKHDRAYAVAMHNERVIADMESRIIRGAIIPDAHPHE*
Ga0065166_100039878F042864N/AMTTKTTKAELVNDRAMTELLKRKAINFRETASLKDRDGCVKGLGSYALYGVDHVRGQLVVLASEPTAGDFNKYVTAKAKAEVVARYDHVVEYRDAGSHSNPKVTILCWTKAE*
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