NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065166_10219817

Scaffold Ga0065166_10219817


Overview

Basic Information
Taxon OID3300004112 Open in IMG/M
Scaffold IDGa0065166_10219817 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)754
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003182Metagenome / Metatranscriptome502Y
F012454Metagenome280N
F058101Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0065166_102198171F058101GGAGMTINPKDIHIATDGKIYSFSGFGGVMNCSDCDNDTMVNEYDRQDDGAVMWFCKSCEDRLHL*
Ga0065166_102198172F003182AGGAGMHILQFDCSICSKLYGKPKQRHGLKKGAELTAHEWFAQCMSCGTFGIKIVDDARIGELSQ
Ga0065166_102198173F012454N/ALVVAKRLGYEYTPGITWDKTKADVSEHIEVKWSANPNSNLWIQESDRHDRDIAVLVTGNSPKMHIVGWMPVAIAKKPRYRNASQNNWSVPQINLQPIETLQRSNYAHPSI*
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