Scaffold Ga0062593_100020049

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0062593_100020049

Scaffold Ga0062593_100020049

Overview

Basic Information
Taxon OID	3300004114 Open in IMG/M
Scaffold ID	Ga0062593_100020049 Open in IMG/M
Source Dataset Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3502
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location Name	Wisconsin, United States
Coordinates	Lat. (^o)	43.2958	Long. (^o)	-89.3799	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052578	Metagenome / Metatranscriptome	142	Y
F082663	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062593_1000200493	F082663	N/A	MIPALHIVALQNTPQQSGGGLGVSIEIVGATVLACTLLTATVLLLSKYRRRKDAMILRERQARHEMQELCPDGWAARIILYGDGAPLPDDAPGGRNVCVEWTEYESDSAGHTEVAVARRMWARTISGALRGMLADRQLDVELEKIERRVLGDTAGGGGETGPPATGPPAGPSR*
Ga0062593_1000200495	F052578	GAG	LDPDLRNALLIVGLIFCGFFAAVTLYVIVDSGLRLRTYGDIGAIALYGVSLLIVVMIAAGLIGALRNPPDD*

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