NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066180_10348809

Scaffold Ga0066180_10348809


Overview

Basic Information
Taxon OID3300004128 Open in IMG/M
Scaffold IDGa0066180_10348809 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)585
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → typhus group → Rickettsia typhi(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101259Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0066180_103488091F101259N/ASC*IYYAENEALSYEIFM*GDIGIVTDVRFYGVAPHWYFRPFMA*LIACPYHKTGVFGLLLLFFLLFFQPTIHGTNEQNNYLKRSVLFLRNKLKRSNTYTSTYFILEANLYHQFTYTLFVMCCFYGSSFLPYGRFYNRLGGN*GLFGADCFILCYLAFPALRRPLLLEYFLYYIFIKTNQIANHNLSKNVLLQS
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Institute for Fundamental Biomedical Research
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