NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062386_100172841

Scaffold Ga0062386_100172841


Overview

Basic Information
Taxon OID3300004152 Open in IMG/M
Scaffold IDGa0062386_100172841 Open in IMG/M
Source Dataset NameCoassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1692
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F032938Metagenome / Metatranscriptome178Y
F036810Metagenome169Y
F045709Metagenome / Metatranscriptome152Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0062386_1001728411F036810N/ATKELDMSLQSSQGTCVSTPAIWMARATAKCRAIQLSIERRSFERKLETIVRAANAHHSCGQSPGSAQFKLLRKCADDLCANFAQRWDISPELLEAQIPAITKLKSLADPPTKPEPLVLVTLGVAGAVALFFLMGVLASLASVGYHLIGGR*
Ga0062386_1001728412F070426GGAGGMILELIVAAEASALSASRIRRSQMRRQEILLGGSTSEINLPFLDQYLRQQTANPTKLQTFAAQKLAAVCRQVVHTQAFELLVLKLIQSASCRYRRESEISKVKVIL*
Ga0062386_1001728413F045709AGGMNLTPSQKGSFLAGVALWVLIWASVWKADDIAEAMRIQRWFNSTRCLRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLFLPCLEKLLRQKGTASATLQ*
Ga0062386_1001728414F014894AGGAGGMSLRKGSAIMRMSIGVPGFSIYFEHHQIKPFIKDHSKKAKDLFNERVVPAVLRGTCKALEVVANNTADAHDYLISKMKSKQAA*
Ga0062386_1001728415F032938AGGAGMQKYLVVSYDDDQQQWFWDYVAAKTAEDAVAYVCERRPYVIAADAASLSQVQGIARDMKSRSIARIIHQFNS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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