NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063455_100567084

Scaffold Ga0063455_100567084


Overview

Basic Information
Taxon OID3300004153 Open in IMG/M
Scaffold IDGa0063455_100567084 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Hopland, California, USA (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)728
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location NameUSA: Hopland, California
CoordinatesLat. (o)38.99297339Long. (o)-123.0674491Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067058Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0063455_1005670841F067058N/AVRQRPQGHNVPWMKEPAHYVVYGWAGDRLLVYRVGLGEKLELLVADGPGKVRPLADGSAIAVSPDATRVAVVDQEATNVRVLDVATGRELSWLDVTTTSPALRWVSYSGAWVGDRIVAPASPGLAVFHTGPTALELEQVLSLDRAQFPAGVQRPSFVDDEANEIAATADVPPSASGDAVSFFIQCDRITRSCERGAAVPAKDWLRPVEQEGDDR*
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