Scaffold Ga0062589_100151355

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0062589_100151355

Scaffold Ga0062589_100151355

Overview

Basic Information
Taxon OID	3300004156 Open in IMG/M
Scaffold ID	Ga0062589_100151355 Open in IMG/M
Source Dataset Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1592
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location Name	Wisconsin, United States
Coordinates	Lat. (^o)	43.2958	Long. (^o)	-89.3799	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081905	Metagenome	114	Y
F094821	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062589_1001513553	F081905	GAGG	MIISGRNGEVSWDPTGGATTVPILSLNAFTAEFKTEFEDVSCYGDVNRVWLPGMKDSSGSLSGFFNSEELALFEAAEQDTPGTLKLVPSTTEPLVFWTGPAYMDASIDSSLSAPKLTGTWKAAGPILLNGGVLSATAKAARARRLRQAAPDAA*
Ga0062589_1001513554	F094821	N/A	VFSTLAVTGVAGAVLWGHRTAIVVARWRIVRTKDTGGDWILSAAITRIDKFQSRQAPLLFTAPRPGGFWMWPVDAIEIGDTSLLAYLGPPER*

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