Scaffold Ga0066401_1081523

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066401_1081523

Scaffold Ga0066401_1081523

Overview

Basic Information
Taxon OID	3300004184 Open in IMG/M
Scaffold ID	Ga0066401_1081523 Open in IMG/M
Source Dataset Name	Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 1_LOW4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	572
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → Methylobacter marinus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Source Dataset Sampling Location
Location Name	USA: Lake Washington, Seattle, Washington
Coordinates	Lat. (^o)	48.3807	Long. (^o)	-122.1599	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016989	Metagenome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066401_10815231	F016989	N/A	MLTRDKLTIVQWQAVRNTPHHVIIAVSSSGGSAFDEMLERSAGLQGIVDASHSTHPLVSEIGGGTHIMQAQDDVRKWFYTLDEGHRTPDKLQEKALETARHALEALGTHGSAEDLMHYGEFVLSLATRVARAAREGDLMGIGGELVSEKERKFIERLDQLIQERRTR*

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