NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066646_10061594

Scaffold Ga0066646_10061594


Overview

Basic Information
Taxon OID3300004214 Open in IMG/M
Scaffold IDGa0066646_10061594 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1891
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014707Metagenome / Metatranscriptome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0066646_100615941F014707N/AMARDDKFIWLCYDCRKFVCTKCYSRDHKRCYADLIENMYDEIKKTNESNLESVMGMKDEFKEEVDFMDDKLSYFVKNNPFDMNIALVNKIYDNIISLITAKRDETLKTMNGLKDNYMKNIMQNIDKIKTMITKAKDTEDRLKKELKSMDKKSPFDFCRELLDSNVNGDLTDECSDIAVFQRQEFTRIKQCSIDTNTIVFNDSNAVIEQCKNLREYMSEKVNNFYTNYEKYRSKYAFTVVMNMKEFIVYLIDKHEINKVTYMNEFVIPCYARWINISGEKLILTGGEKDYIESLNMTYMFRFRKYEPPEIGFSAKVYHKADMLYRRRAHSLIYFNDFM*
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