NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066650_10049484

Scaffold Ga0066650_10049484


Overview

Basic Information
Taxon OID3300004239 Open in IMG/M
Scaffold IDGa0066650_10049484 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG23_combo_of_CG06-09_8/20/14_all
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2172
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039194Metagenome164Y
F071959Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0066650_100494842F039194AGGAGGMPDLYIFKAQVGMFDPVALQGHNVAIHYQQSTHYRKVAFLEGIPPFQCVNLGALAALTPSGRINIVNLEMADNEFGLWRWYPIDDAQIRLYHPAGIAKYQLRNLQVPVDMNILFRDPNLVSTEIAIWEDNRPAAEAINGHAFALGAVRLIAIGYRFHTVNLEGNGKGADPELVNAIKMGKTPCTDVWCSGRGIGD*
Ga0066650_100494844F071959AGGAGGMASRNYLIMTDDMTLSARREYRLNALAAGLERCGLKGIGDINADIPGLQSIPLANKMSRVKLIHDFILTGDWPRTIDERELAPLTDFVAAAAQDSWLTVALAVGGVVSALNALAAYTLLVGKLMVCYGVSIESPIVPMPVSRLIFRRGGAAGNITAQFDMEPMGVRLEPDAFFSEAVVIDPQELFAIQVLGRAVIAAGARVHIHNFLFENTGLVVS*
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