NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066650_10260124

Scaffold Ga0066650_10260124


Overview

Basic Information
Taxon OID3300004239 Open in IMG/M
Scaffold IDGa0066650_10260124 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG23_combo_of_CG06-09_8/20/14_all
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)861
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030143Metagenome / Metatranscriptome186Y
F056343Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0066650_102601241F030143N/ALASQGHDLYRLIDGYPALMVKGLMAASQVRSRHRLMEQGVSLTVAVTGALDLALNQGKGKVLERWLKEMSGEEKSEPPEEKPKMSDRAFSFFTGM
Ga0066650_102601242F056343AGGAGGMPEPITDSQVLSSYLAEEQINGFTVKPWTIKQLILVMPILDALVQELKNQGVTLDNLGEMFESQGLAAAKDIIQTILPRLPEFLAITLRIDREQAEELDLGLGMQLAVKVLRMNIDHLKNAFGLIMSQMGVLIGPEATP*
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