NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007787_10000127

Scaffold Ga0007787_10000127


Overview

Basic Information
Taxon OID3300004240 Open in IMG/M
Scaffold IDGa0007787_10000127 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21798
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (87.10%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004344Metagenome / Metatranscriptome442Y
F025466Metagenome / Metatranscriptome201Y
F054668Metagenome / Metatranscriptome139Y
F101146Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0007787_1000012711F101146AGGAGMTYTVISNREVCGKIKGDTITAKELQDAGISAETLIAGNHIKASNTAPQNPSIKTETEEGATK*
Ga0007787_1000012714F004344AGTAGGMDGLNIKVKTTDGVEKTFSLRPRIIVDFEQKYGKGLAKLIGEEQKLEHIYYLGWLALKSNGVIVKPFGPEFLDTLEGVQLDTDPNSESTEIA*
Ga0007787_1000012723F054668AGGAGMGISTRQVTVTTAVTALVDATAEAEMVYLHSVSGTCFLGNSDVTTSTGYRMDNGDKIAIENKANGIWAITTSGTVIMNVMAIGK*
Ga0007787_1000012727F025466AGGAGMDKKKLEAIAMTYLRAGAAAVAALYLADPNRPLKEYLAAGIAAVAGPLLKAVDPRATEFGRGAK*
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