NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066396_10002300

Scaffold Ga0066396_10002300


Overview

Basic Information
Taxon OID3300004267 Open in IMG/M
Scaffold IDGa0066396_10002300 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1819
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043570Metagenome156N
F063510Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0066396_100023002F063510N/AMKQPCQNIRRLDIVLNMQGGQQAVDIFALFLAPFFALMTVFALAAFSPLNKIMRPIRFFLFACIGGAVAAMILIVVGLLGKISSGIWRFDVVISFIACAVIGLSQFWSSETIIDKKKDERIHKQDSGWF*
Ga0066396_100023003F043570AGGAGGMAKKIREFMTHRDPDEHIWVERDESAVIGTARMGQRLVPKIRPFDLLRNAPRSGNRTQVMIWEGDTLRIAAENLVGTEEQLTRASDHDLIFFQFCGRSTIESECGVVELEPGEFVLVPAAISHRSSGKDECLRVRVATRELVNLGVDPEKPLVETKFKVRPSEPFTPQSNGRQDAQAGHVLEHITFWDPQSDVWIERDPTALIGTVTDGSRPFKKIRGFDYFSGMTGKGGAKAPVLYNGKEFRIDVYNLEEEQRGFHRGCDEDEIWFQFRGHSLNHTEWGAMELDAGQTAMIPRGIAHRITGSPGFLRMVFYSRGLVQPKAFNNVTERETKFEVQ*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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